Top San Diego Water Tours

Spend a few hours relaxing, sunbathing and sightseeing in the placid waters just off San Diego during this 1 or 2 hour San Diego Harbor cruise. Sit back and relax as you take in a fully-narrated tour, offering top-notch sight lines of the San Diego skyline, a cruise under Coronado Bridge, a look at the bustling US Naval fleet and a chance to spot some of the harbor’s resident sea lions. Choose between 1 and 2 hour cruise options, offering you two trips to fit your schedule and interests.

Take in the highlights of San Diego Bay during a sightseeing tour by amphibious vehicle. Travel on both land and water, starting on the streets of Seaport Village and rolling down Harbor Drive alongside San Diego Bay. Transition into the water after departing Seaport Village. Cruise past the SeaWorld and Vacation Isle, experiencing the best of maritime San Diego on this fun and informative tour.

Encounter some of Earth's most magnificent creatures on a 3-hour whale-watching cruise in San Diego. The voyage departs right from Mission Bay, so you’ll be out into the open ocean and looking for animals in just 10 short minutes. Marine biologists onboard help you spot whales and dolphins and learn about their life in the deep blue sea.

See San Diego’s sights by land and water on a 1.5-hour SEAL tour independent shore excursion, and explore this picturesque port of call in an amphibious vehicle. Listen to stories that bring San Diego’s history to life as you travel along the water’s edge, then steer straight into San Diego Bay. Take in sweeping views of SeaWorld, watch for the seals and sea lions that play, eat and bask at Quivira Basin and return to your ship along the scenic Harbor Drive.

See San Diego from a marine vantage point on this 90-minute harbor cruise, including a look at the marina, seabirds and potential sea lion sightings. Listen to live narration from your captain and enjoy for-purchase snacks from the onboard snack bar.

Go whale watching from San Diego aboard a replica of a historic sailing schooner that won the world’s first America’s Cup sailing competition in 1851. Throughout your cruise, your expert guide shares informative commentary about gray whales, dolphins, and other marine animals, along with details about the US Navy sites you pass as you head out on the Pacific Ocean.

Experience the thrill of driving your own speed boat during this tour of San Diego Harbor. Learn the basics of boating from your expert guide before following your guide's boat around the harbor, cruising past highlights such as the USS Midway, a US Navy submarine, Coronado Bridge, Seaport Village, the cruise ship terminal, the historic ship Star of India and San Diego Maritime Museum. Learn from your guide about these landmarks via the onboard two-way communications system and stop for photo ops on this exciting tour.

Sail into the setting sun aboard a Catalina style sailboat during this intimate cruise with a small group. Feel like you have the ship all to yourself on this trip that’s limited to just 12 total guests, watching as the last rays of the sun drop into the glistening waves. Enjoy the included beer, soft drinks and snacks during the ride, as well as jackets and wind gear in case you get cold. You can even plug in your own music to add to the fun. Departure times vary throughout the year. Guest must contact Sail San Diego after purchase for the exact departure time.

Take an evening cruise wining and dining aboard the ‘Spirit of San Diego,’ enjoying top-notch food and drink, plus sparkling skyline views during this San Diego dinner cruise. Dig into your included gourmet meal, accompanied by a complimentary cocktail and live on-board entertainment, as you cruise 25-miles worth of California’s beautiful coastline and gaze at the twinkling stars above. You can also upgrade your cruise to include an unlimited open bar for an additional price.

Enjoy a classic San Diego sunset while spotting whales and dolphins during this wildlife cruise in Mission Bay Park. Travel comfortably on a well-equipped boat with a dedicated and knowledgeable crew. Learn about San Diego's coastal marine mammals as you scan the harbor. Watch the sun set while sailing the shore.

Enjoy a sailing adventure on a Catalina-style sailboat with just six people for a comfortable, semi-private experience (or, find five friends and fill up the whole boat). Sail in San Diego Harbor during the day. Sit back and relax to enjoy the water views while enjoying complimentary beer, soft drinks and snacks.

A boat ride in San Diego Bay offers the perfect vantage point from which to view the city’s Skyline. This luxury sailing adventure on a 40-foot yacht lets visitors take in the sights in comfort and privacy, the perfect activity for those seeking an extra special addition to their San Diego trip.

Sail along the San Diego Bay on this relaxing 1-hour cruise. While aboard, enjoy views of the city, as well as US naval vessels, the Star of India, and the Coronado Bridge. Catch sight of the Hotel del Coronado, and spot sea lions in their natural habitats. Along the 1-hour route, you can pick up a snack and drink at the snack bar (own expense), and relax as you cruise the water.

Sail out into the San Diego Bay and take in great views of the city's skyline with this small-group tour aboard a 34-foot Catalina sailboat led by a local captain. You can choose from morning, afternoon, or evening departures and you will be welcome to bring your own drinks on board.

Watch the sun set over San Diego during an all-inclusive small-group cruise aboard a classic sailboat. Pass landmarks such as the Maritime Museum, Coronado Bridge, and USS Midway, and look for sea lions, dolphins, and other wildlife around San Diego Harbor on the 2.5-hour cruise.

Sail the lovely waters off San Diego on a private yacht charter. The itinerary is up to you, or your captain can suggest some places to go. You can opt for a whale watching tour (seasonal), or lay anchor and go for a swim. If you prefer, choose a bay tour; seeing the sights like the Hotel del Coronado, Point Loma Lighthouse, Tijuana, and the San Diego skyline.

Make the most of your weekend with a 2-hour brunch cruise through San Diego Bay. Capture prime views of the city skyline and harbor from a luxury yacht, and round out your morning bliss with bottomless mimosas and our brunch menu service includes breakfast favorites, vegetarian options, and so much more. Indoor and Outdoor seating available please call Flagship Cruises & Events with seating preference. Listen to our live entertainment as the attentive crew constantly top off your glass. Shouldn’t weekends always be like this?

Set sail on the San Diego Harbor without spending a fortune on this affordable small-group sailing tour. Climb aboard a replica 1904 yacht that's unlike any other in San Diego, and enjoy several hours of cruising the bay and harbor, from Seaport Village past the USS Midway Museum and other shoreline attractions. No sailing experience is required, as a captain handles the navigation so you can enjoy the voyage.

Set sail at one of the best times of day—sunset—during this San Diego Bay cruise. Board a comfortable sailing yacht and cruise along San Diego's coastline, taking in views of the scenic waterfront, military vessels, and historical landmarks. Catch sight of marine life and enjoy spectacular photo ops. Gorgeous sunset views and Wine makes this tour a great choice for couples or travelers celebrating a special occasion.

Get up close and personal with the highlights of the San Diego Bay—and travel in style—aboard this tiki boat tour. Meet at the marina in the afternoon, hop aboard your one-of-a-kind vessel, and set sail. You’ll see famous boats like the Star of India and the USS Midway Museum, will admire up-close perspectives of Coronado Island and the North Island Naval Air Station, and much more.

Spend happy hour on the water during this San Diego evening cruise. Enjoy views of the water and city skyline as you glide through San Diego Bay.

On this experience, relax in style aboard a luxury dinner cruise. Enjoy panoramic views from the boat's deck and take your time over a gourmet, 3-course meal, as you cruise past twinkling city lights that ring San Diego Bay. Listen to an entertaining DJ play music and enjoy an unforgettable evening, or celebrate a birthday, anniversary or another special occasion.

Set sail on the San Diego Harbor for a 2.5-hour dinner cruise with beer pairings, and spend an evening dancing, drinking and dining on board an elegant yacht. Kick off the night with a sumptuous buffet paired with beers from the region’s renowned craft breweries. Watch the sun set into the Pacific Ocean and take in views of San Diego’s city lights, Coronado Island and the bustling harbor as you dance to songs by the yacht’s DJ.

Cruise around San Diego bay aboard an authentic 1992 America’s Cup racing yacht and travel at twice the speed of the average sailboat. The Stars and Stripes USA-11 is one of the fastest and best known America’s Cup racing yachts. It was designed and built to be raced in San Diego, and has been restored to pristine condition. Take a turn at the helm and join in grinding the winches to raise and trim the sails.